If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ), 'gf_id' => 'HOM05D000980', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000980' ), 'data_identifier' => 'HOM05D000980', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000980', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00710' => 'bna', 'A03p02680' => 'bna', 'A04p27530' => 'bna', 'A05p10290' => 'bna', 'A05p37700' => 'bna', 'A10p30050' => 'bna', 'Aa31LG3G5050' => 'aar', 'Aa31LG5G21120' => 'aar', 'Aa31sc52G130' => 'aar', 'Actinidia07938' => 'ach', 'Ah.08g210100' => 'amhyb', 'AL1G46420' => 'aly', 'AL222U10010' => 'aly', 'AL3G23200' => 'aly', 'AL4G31510' => 'aly', 'AL4G32080' => 'aly', 'AL6G16360' => 'aly', 'Aqoxy1G00687' => 'aox', 'Aqoxy1G00688' => 'aox', 'Aqoxy1G00689' => 'aox', 'Aqoxy1G00695' => 'aox', 'Aqoxy1G01055' => 'aox', 'Aqoxy5G00994' => 'aox', 'Aqoxy5G00995' => 'aox', 'Aqoxy5G00996' => 'aox', 'arahy.Tifrunner.gnm1.ann1.07E48G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X3X0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IB3IU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4TS5MB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.87RFWK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0SKQG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECG1V9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LFJE5N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PDE16W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R9W6MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4JX9I' => 'arhy', 'AT2G35460' => 'ath', 'AT2G35980' => 'ath', 'AT3G11650' => 'ath', 'AT5G06320' => 'ath', 'ATR0772G097' => 'atr', 'ATR0772G110' => 'atr', 'ATR0772G121' => 'atr', 'Atru.chr3.3498' => 'acertr', 'Atru.chr8.1382' => 'acertr', 'AUR62024021' => 'cqu', 'AUR62037049' => 'cqu', 'AUR62041321' => 'cqu', 'BcaB01g03866' => 'bca', 'BcaB01g05729' => 'bca', 'BcaB01g05988' => 'bca', 'BcaB02g09428' => 'bca', 'BcaB06g25596' => 'bca', 'BcaB06g28902' => 'bca', 'BcaC01g05679' => 'bca', 'BcaC02g07643' => 'bca', 'BcaC02g11650' => 'bca', 'BcaC03g13336' => 'bca', 'BcaC05g29347' => 'bca', 'BcaC06g32366' => 'bca', 'BcaNung06317' => 'bca', 'BcaNung06483' => 'bca', 'BolC1t05301H' => 'bol', 'BolC2t06429H' => 'bol', 'BolC3t12856H' => 'bol', 'BolC3t14728H' => 'bol', 'BolC4t22920H' => 'bol', 'BolC4t27981H' => 'bol', 'BolC5t34294H' => 'bol', 'BolC9t59792H' => 'bol', 'BraA01t04170Z' => 'bra', 'BraA02t05055Z' => 'bra', 'BraA03t09630Z' => 'bra', 'BraA04t18249Z' => 'bra', 'BraA05t19967Z' => 'bra', 'BraA05t22565Z' => 'bra', 'BraA10t45045Z' => 'bra', 'C02p04710' => 'bna', 'C03p03080' => 'bna', 'C03p23280' => 'bna', 'C04p12720' => 'bna', 'C04p65030' => 'bna', 'C05p56300' => 'bna', 'C09p70460' => 'bna', 'CAN.G1245.10' => 'can', 'CAN.G1245.11' => 'can', 'CAN.G1245.12' => 'can', 'CAN.G246.4' => 'can', 'CAN.G574.27' => 'can', 'CAN.G574.28' => 'can', 'CANSAT64G0277' => 'cansat', 'CANSAT64G0988' => 'cansat', 'CANSAT64G1015' => 'cansat', 'CANSAT64G1596' => 'cansat', 'CANSAT80G1151' => 'cansat', 'CANSAT80G1340' => 'cansat', 'CANSAT80G2223' => 'cansat', 'CANSAT80G2438' => 'cansat', 'CARHR031640' => 'chi', 'CARHR086200' => 'chi', 'CARHR129610' => 'chi', 'CARHR130230' => 'chi', 'CARHR202430' => 'chi', 'CARHR207060' => 'chi', 'Carub.0003s1097' => 'cru', 'Carub.0004s1714' => 'cru', 'Carub.0004s1772' => 'cru', 'Carub.0006s0521' => 'cru', 'Ca_09047_v3' => 'car', 'Ca_09048_v3' => 'car', 'Ca_11713_v3' => 'car', 'Ca_25352_v3' => 'car', 'Ca_27525_v3' => 'car', 'Ca_28071_v3' => 'car', 'Cc01_g10170' => 'ccan', 'Cc06_g06450' => 'ccan', 'CDE02G1018' => 'cde', 'CDE02G2919' => 'cde', 'CDE08G0253' => 'cde', 'CDE08G0799' => 'cde', 'Cfa014078' => 'cfa', 'Cfa016680' => 'cfa', 'Cfa016681' => 'cfa', 'Cfa016682' => 'cfa', 'Cfa016683' => 'cfa', 'Cfa017239' => 'cfa', 'Cfa017240' => 'cfa', 'Cfa017242' => 'cfa', 'Cfa017597' => 'cfa', 'Cfa021147' => 'cfa', 'Ciclev10012678m.g' => 'ccl', 'CiPaw.09G019800' => 'cil', 'CiPaw.09G019900' => 'cil', 'CiPaw.09G020000' => 'cil', 'CiPaw.10G009200' => 'cil', 'CiPaw.10G016300' => 'cil', 'CiPaw.10G016400' => 'cil', 'CiPaw.10G016500' => 'cil', 'ClCG01G013910' => 'cla', 'ClCG10G018420' => 'cla', 'ClCG10G018430' => 'cla', 'ClCG10G018440' => 'cla', 'COL.COLO4_19217' => 'col', 'COL.COLO4_29592' => 'col', 'Cpa.g.sc104.48' => 'cpa', 'CsaV3_1G014170' => 'csa', 'CsaV3_3G037820' => 'csa', 'CsaV3_3G037830' => 'csa', 'CsaV3_3G037840' => 'csa', 'CsaV3_3G037850' => 'csa', 'CsaV3_3G037860' => 'csa', 'CsaV3_3G037870' => 'csa', 'CsaV3_6G041040' => 'csa', 'CSS0004876' => 'camsi', 'CSS0021498' => 'camsi', 'CSS0049475' => 'camsi', 'DCAR_013437' => 'dca', 'DCAR_015500' => 'dca', 'DCAR_016920' => 'dca', 'DCAR_020714' => 'dca', 'Dinv12333' => 'din', 'Dinv12334' => 'din', 'Duzib093G0606' => 'dzi', 'Duzib093G0648' => 'dzi', 'Duzib106G0118' => 'dzi', 'Duzib128G1373' => 'dzi', 'Duzib150G0967' => 'dzi', 'Duzib170G0419' => 'dzi', 'ECA233G2410' => 'eca', 'ECA234G2066' => 'eca', 'ECA238G3008' => 'eca', 'ECA248G3604' => 'eca', 'EL10Ac7g16805' => 'bvu', 'EL10Ac9g21008' => 'bvu', 'Eucgr.A02597' => 'egr', 'Eucgr.B03918' => 'egr', 'Eucgr.J00393' => 'egr', 'Eucgr.K02608' => 'egr', 'Eucgr.K02611' => 'egr', 'Eucgr.K02612' => 'egr', 'Eucgr.K02614' => 'egr', 'Eucgr.L01524' => 'egr', 'Eucgr.L01526' => 'egr', 'FAN01G0115' => 'fan', 'FAN02G0743' => 'fan', 'FAN02G0899' => 'fan', 'FAN02G2957' => 'fan', 'FAN03G3225' => 'fan', 'FAN05G0258' => 'fan', 'FAN05G0326' => 'fan', 'FAN05G2005' => 'fan', 'FAN05G3760' => 'fan', 'FAN05G4570' => 'fan', 'FAN05G4611' => 'fan', 'FAN05G5697' => 'fan', 'FAN06G4907' => 'fan', 'FAN09G0093' => 'fan', 'FAN09G1510' => 'fan', 'FAN09G2910' => 'fan', 'FAN09G3461' => 'fan', 'FAN09G3547' => 'fan', 'FAN10G2402' => 'fan', 'FAN11G0534' => 'fan', 'FAN14G0360' => 'fan', 'FAN14G1799' => 'fan', 'FAN14G3444' => 'fan', 'FAN14G4654' => 'fan', 'FAN14G5784' => 'fan', 'FAN14G5912' => 'fan', 'FAN15G2508' => 'fan', 'FAN16G0197' => 'fan', 'FAN16G1827' => 'fan', 'FAN21G3359' => 'fan', 'FAN21G3954' => 'fan', 'FAN24G3336' => 'fan', 'FAN25G0394' => 'fan', 'FAN25G0910' => 'fan', 'FAN27G0571' => 'fan', 'FvH4_2g26071' => 'fve', 'FvH4_3g30480' => 'fve', 'FvH4_6g11861' => 'fve', 'FvH4_6g18540' => 'fve', 'FvH4_6g18550' => 'fve', 'FvH4_6g18560' => 'fve', 'FvH4_6g18570' => 'fve', 'FvH4_6g18670' => 'fve', 'FvH4_6g20130' => 'fve', 'FvH4_6g20140' => 'fve', 'FvH4_7g13661' => 'fve', 'FvH4_7g32184' => 'fve', 'FvH4_7g32210' => 'fve', 'Glyma.02G197800' => 'gma', 'Glyma.03G201000' => 'gma', 'Glyma.03G201100' => 'gma', 'Glyma.03G201200' => 'gma', 'Glyma.03G201302' => 'gma', 'Glyma.03G201500' => 'gma', 'Glyma.03G201550' => 'gma', 'Glyma.07G103700' => 'gma', 'Glyma.07G103800' => 'gma', 'Glyma.07G103900' => 'gma', 'Glyma.10G079400' => 'gma', 'Glyma.10G079700' => 'gma', 'Glyma.10G079900' => 'gma', 'Glyma.19G198600' => 'gma', 'Glyma.19G198700' => 'gma', 'Glyma.19G198800' => 'gma', 'Gohir.A01G202100' => 'ghi', 'Gohir.A09G087800' => 'ghi', 'Gohir.A09G135000' => 'ghi', 'Gohir.D01G192001' => 'ghi', 'Gohir.D09G131600' => 'ghi', 'Gorai.002G235900' => 'gra', 'Gorai.006G104100' => 'gra', 'Gorai.006G150200' => 'gra', 'GSVIVG01031450001' => 'vvi', 'HanXRQChr01g0025641' => 'han', 'HanXRQChr06g0183301' => 'han', 'HanXRQChr07g0202391' => 'han', 'HanXRQChr09g0239841' => 'han', 'HanXRQChr09g0239851' => 'han', 'Haze_19601' => 'cav', 'Haze_19696' => 'cav', 'Haze_19700' => 'cav', 'Haze_20970' => 'cav', 'Haze_22776' => 'cav', 'Haze_23524' => 'cav', 'HPP92_000056' => 'vpl', 'HPP92_006813' => 'vpl', 'HPP92_006814' => 'vpl', 'HPP92_006815' => 'vpl', 'HPP92_006816' => 'vpl', 'HPP92_013820' => 'vpl', 'HPP92_024435' => 'vpl', 'HPP92_025142' => 'vpl', 'HPP92_026080' => 'vpl', 'Lalb_Chr02g0154511' => 'lal', 'Lalb_Chr02g0154521' => 'lal', 'Lalb_Chr14g0370671' => 'lal', 'Lalb_Chr20g0111411' => 'lal', 'Lalb_Chr20g0111421' => 'lal', 'Lalb_Chr24g0398141' => 'lal', 'Lj1g0003668' => 'lja', 'Lj1g0007402' => 'lja', 'Lj1g0023629' => 'lja', 'Lj1P1050T22' => 'lonja', 'Lj2g0001681' => 'lja', 'Lj2g0021480' => 'lja', 'Lj4g0000386' => 'lja', 'Lj4g0016694' => 'lja', 'Lj4g0023487' => 'lja', 'Lj5g0006768' => 'lja', 'Lj5g0017497' => 'lja', 'Lj5g0017839' => 'lja', 'Lsat_1_v5_gn_1_57181' => 'lsa', 'Manes.09G046750' => 'mes', 'Manes.11G153200' => 'mes', 'MBI17_g09694_MAGBIO' => 'mbi', 'MBI17_g09705_MAGBIO' => 'mbi', 'MBI17_g16305_MAGBIO' => 'mbi', 'MBI17_g17636_MAGBIO' => 'mbi', 'MBI17_g23875_MAGBIO' => 'mbi', 'MBI17_g40223_MAGBIO' => 'mbi', 'MBI17_g43320_MAGBIO' => 'mbi', 'MBI17_g44016_MAGBIO' => 'mbi', 'MBI17_g44277_MAGBIO' => 'mbi', 'MBI17_g44734_MAGBIO' => 'mbi', 'MBI17_g46458_MAGBIO' => 'mbi', 'MBI17_g47351_MAGBIO' => 'mbi', 'MD03G1127800' => 'mdo', 'MD11G1149600' => 'mdo', 'MD11G1207900' => 'mdo', 'MD12G1035100' => 'mdo', 'MD12G1035300' => 'mdo', 'MD12G1035400' => 'mdo', 'MD12G1038600' => 'mdo', 'MD14G1021700' => 'mdo', 'MD14G1021800' => 'mdo', 'MD14G1021900' => 'mdo', 'MD14G1022000' => 'mdo', 'MD14G1022100' => 'mdo', 'MD14G1022800' => 'mdo', 'MD14G1025900' => 'mdo', 'MD14G1037300' => 'mdo', 'Medtr1g019910' => 'mtr', 'Medtr1g019920' => 'mtr', 'Medtr1g057230' => 'mtr', 'Medtr1g057270' => 'mtr', 'Medtr1g057290' => 'mtr', 'Medtr1g057300' => 'mtr', 'Medtr1g057400' => 'mtr', 'Medtr2g011350' => 'mtr', 'Medtr2g048270' => 'mtr', 'Medtr4g094322' => 'mtr', 'Medtr4g119428' => 'mtr', 'Medtr6g007630' => 'mtr', 'Medtr6g070890' => 'mtr', 'Medtr6g070900' => 'mtr', 'Medtr6g071400' => 'mtr', 'Medtr6g071410' => 'mtr', 'Medtr6g071710' => 'mtr', 'Medtr6g453010' => 'mtr', 'Medtr6g471080' => 'mtr', 'Medtr6g471090' => 'mtr', 'Medtr7g105870' => 'mtr', 'Medtr7g105970' => 'mtr', 'Medtr7g106000' => 'mtr', 'Medtr7g106010' => 'mtr', 'Medtr7g106030' => 'mtr', 'MELO3C004861.2' => 'cme', 'MELO3C009525.2' => 'cme', 'MELO3C009526.2' => 'cme', 'MELO3C009527.2' => 'cme', 'MELO3C009528.2' => 'cme', 'MELO3C009529.2' => 'cme', 'MELO3C009530.2' => 'cme', 'MELO3C009531.2' => 'cme', 'MELO3C024581.2' => 'cme', 'Migut.J00713' => 'egut', 'Migut.J00714' => 'egut', 'Migut.N02538' => 'egut', 'MSTRG.10476' => 'ama', 'MSTRG.17755' => 'ama', 'MSTRG.19314' => 'ama', 'MSTRG.21082' => 'ama', 'MSTRG.5904' => 'ama', 'Nitab4.5_0000020g0190' => 'nta', 'Nitab4.5_0000020g0200' => 'nta', 'Nitab4.5_0001287g0050' => 'nta', 'Nitab4.5_0001287g0070' => 'nta', 'Nitab4.5_0002817g0010' => 'nta', 'Nitab4.5_0003105g0020' => 'nta', 'Nitab4.5_0003105g0030' => 'nta', 'Nitab4.5_0003810g0010' => 'nta', 'Nitab4.5_0003810g0020' => 'nta', 'Nitab4.5_0003810g0030' => 'nta', 'Nn2g14272' => 'nnu', 'Nn2g14274' => 'nnu', 'Nn2g14276' => 'nnu', 'Nn2g14277' => 'nnu', 'Nn6g34725' => 'nnu', 'Nn6g34727' => 'nnu', 'Nn6g34728' => 'nnu', 'Nn6g34729' => 'nnu', 'Nn6g34730' => 'nnu', 'Oeu000603.1' => 'oeu', 'Oeu035520.1' => 'oeu', 'Oeu052629.1' => 'oeu', 'Os01g0864300' => 'osa', 'Os01g0864500' => 'osa', 'Os04g0685300' => 'osa', 'Os10g0547200' => 'osa', 'Os12g0158900' => 'osa', 'Os12g0159000' => 'osa', 'Peaxi162Scf00150g00125' => 'pax', 'Peaxi162Scf00211g00128' => 'pax', 'Peaxi162Scf00388g00011' => 'pax', 'Peaxi162Scf00388g00014' => 'pax', 'Peaxi162Scf00939g00215' => 'pax', 'PGR119G1497' => 'pgr', 'PGR142G4095' => 'pgr', 'PGSC0003DMG400016390' => 'stu', 'PGSC0003DMG400024324' => 'stu', 'PGSC0003DMG400028152' => 'stu', 'PGSC0003DMG400028153' => 'stu', 'PGSC0003DMG400028235' => 'stu', 'PGSC0003DMG400039594' => 'stu', 'Phvul.001G194600' => 'pvu', 'Phvul.001G194700' => 'pvu', 'Phvul.001G194800' => 'pvu', 'Phvul.001G194900' => 'pvu', 'Phvul.004G148800' => 'pvu', 'Phvul.004G148900' => 'pvu', 'Phvul.007G268700' => 'pvu', 'Phvul.007G268800' => 'pvu', 'Phvul.007G268900' => 'pvu', 'Potri.006G204300' => 'ptr', 'Potri.009G003800' => 'ptr', 'Potri.016G071600' => 'ptr', 'Pp3c5_2020' => 'ppa', 'Prupe.1G185400' => 'ppe', 'Prupe.1G216300' => 'ppe', 'Prupe.1G413200' => 'ppe', 'Prupe.5G141700' => 'ppe', 'Prupe.6G103200' => 'ppe', 'Prupe.6G114100' => 'ppe', 'Prupe.6G291900' => 'ppe', 'Prupe.6G357300' => 'ppe', 'Prupe.7G097200' => 'ppe', 'Prupe.7G111300' => 'ppe', 'Prupe.7G111400' => 'ppe', 'Prupe.7G111500' => 'ppe', 'Prupe.7G111600' => 'ppe', 'Prupe.7G111700' => 'ppe', 'Prupe.7G111800' => 'ppe', 'Prupe.7G111900' => 'ppe', 'Prupe.7G112000' => 'ppe', 'Prupe.7G112100' => 'ppe', 'Psat0s1622g0080' => 'psa', 'Psat0s2849g0040' => 'psa', 'Psat1g030120' => 'psa', 'Psat1g030160' => 'psa', 'Psat3g029640' => 'psa', 'Psat3g029680' => 'psa', 'Psat3g029760' => 'psa', 'Psat3g029800' => 'psa', 'Psat6g085320' => 'psa', 'Psat6g085400' => 'psa', 'Psat6g085520' => 'psa', 'Psat6g115400' => 'psa', 'Psat6g127720' => 'psa', 'Psat7g221320' => 'psa', 'PSO017G0203' => 'pso', 'PSO017G0252' => 'pso', 'PSO017G1083' => 'pso', 'PSO017G1480' => 'pso', 'PSO017G3333' => 'pso', 'PSO017G3440' => 'pso', 'PSO017G5182' => 'pso', 'PSO017G5260' => 'pso', 'PSO017G5574' => 'pso', 'PSO017G6372' => 'pso', 'PSO017G6951' => 'pso', 'PSO017G7213' => 'pso', 'PSO017G7313' => 'pso', 'PSO063G3876' => 'pso', 'PSO170G0872' => 'pso', 'PSO170G1461' => 'pso', 'PSO170G2969' => 'pso', 'PSO339G6006' => 'pso', 'PSO384G0998' => 'pso', 'PSO384G1211' => 'pso', 'PSO675G2327' => 'pso', 'PSO675G5236' => 'pso', 'PSO675G6240' => 'pso', 'PSO675G6772' => 'pso', 'PSO675G8244' => 'pso', 'PSO675G8368' => 'pso', 'QL01p014798' => 'qlo', 'QL01p014802' => 'qlo', 'QL07p036978' => 'qlo', 'QL07p036985' => 'qlo', 'QL07p036994' => 'qlo', 'QL07p037015' => 'qlo', 'QL07p037051' => 'qlo', 'QL07p037054' => 'qlo', 'QL07p037057' => 'qlo', 'QL07p038882' => 'qlo', 'QL07p039202' => 'qlo', 'RcHm_v2.0_Chr3g0448411' => 'rch', 'RcHm_v2.0_Chr3g0463611' => 'rch', 'RcHm_v2.0_Chr3g0473091' => 'rch', 'RcHm_v2.0_Chr3g0473101' => 'rch', 'RcHm_v2.0_Chr3g0473111' => 'rch', 'RcHm_v2.0_Chr3g0473121' => 'rch', 'RcHm_v2.0_Chr3g0473631' => 'rch', 'RcHm_v2.0_Chr3g0473641' => 'rch', 'RcHm_v2.0_Chr3g0475591' => 'rch', 'RcHm_v2.0_Chr3g0475631' => 'rch', 'RcHm_v2.0_Chr3g0475641' => 'rch', 'RcHm_v2.0_Chr3g0475651' => 'rch', 'RcHm_v2.0_Chr3g0475661' => 'rch', 'RcHm_v2.0_Chr5g0013231' => 'rch', 'RcHm_v2.0_Chr5g0056431' => 'rch', 'RcHm_v2.0_Chr5g0069811' => 'rch', 'RcHm_v2.0_Chr6g0258251' => 'rch', 'Rhsim01G0210100' => 'rsi', 'Rhsim07G0206100' => 'rsi', 'Rhsim07G0206200' => 'rsi', 'Rhsim07G0207200' => 'rsi', 'Rhsim07G0207300' => 'rsi', 'RhsimUnG0249100' => 'rsi', 'Sabra16G0071400' => 'sbr', 'Sabra16G0071500' => 'sbr', 'Sabra16G0071700' => 'sbr', 'Sabra16G0071900' => 'sbr', 'Sabra16G0073600' => 'sbr', 'Sabra16G0073800' => 'sbr', 'SalBow1G5579' => 'sbo', 'SalBow3G1483' => 'sbo', 'SalBow6G7102' => 'sbo', 'Sc02g0000580' => 'sci', 'Sc06g0008950' => 'sci', 'Sed0006767' => 'sed', 'Sed0008035' => 'sed', 'Sed0009188' => 'sed', 'Sed0013630' => 'sed', 'Sed0014685' => 'sed', 'Sed0016968' => 'sed', 'Sed0017364' => 'sed', 'Sed0020015' => 'sed', 'Sed0022825' => 'sed', 'Sed0024613' => 'sed', 'SEGI_02666' => 'sgi', 'SEGI_38221' => 'sgi', 'SEGI_40745' => 'sgi', 'SGA_v2.0_scaffold27G11575' => 'sas', 'SGA_v2.0_scaffold31G12839' => 'sas', 'SGA_v2.0_scaffold331G48915' => 'sas', 'SGA_v2.0_scaffold42G15872' => 'sas', 'Solyc01g007230.4' => 'sly', 'Solyc01g007240.3' => 'sly', 'Solyc10g081970.2' => 'sly', 'Solyc10g081980.2' => 'sly', 'Sopen01g003220' => 'spe', 'Sopen01g003230' => 'spe', 'Sopen10g032480' => 'spe', 'Sopen10g032490' => 'spe', 'Sopen10g032500' => 'spe', 'Sp1g27950' => 'spa', 'Sp1g27960' => 'spa', 'Sp3g09880' => 'spa', 'Sp4g17680' => 'spa', 'Sp4g18230' => 'spa', 'Sp6g36530' => 'spa', 'TAR369G0482' => 'tar', 'TAR633G0760' => 'tar', 'TAR633G0806' => 'tar', 'TAR633G1869' => 'tar', 'TAR636G2632' => 'tar', 'THA.LOC104804070' => 'tha', 'THA.LOC104816696' => 'tha', 'THA.LOC104823631' => 'tha', 'THA.LOC104827444' => 'tha', 'Thecc.05G102200' => 'tca', 'Thecc.09G296800' => 'tca', 'Thhalv10014557m.g' => 'esa', 'Thhalv10017726m.g' => 'esa', 'Thhalv10017735m.g' => 'esa', 'Thhalv10021416m.g' => 'esa', 'TPR.G11092' => 'tpr', 'TPR.G11180' => 'tpr', 'TPR.G17113' => 'tpr', 'TPR.G17143' => 'tpr', 'TPR.G19617' => 'tpr', 'TPR.G23319' => 'tpr', 'TPR.G23328' => 'tpr', 'TPR.G23338' => 'tpr', 'TPR.G23348' => 'tpr', 'TPR.G2784' => 'tpr', 'TPR.G2823' => 'tpr', 'TPR.G30759' => 'tpr', 'TPR.G30762' => 'tpr', 'TPR.G31859' => 'tpr', 'TPR.G35557' => 'tpr', 'TPR.G35566' => 'tpr', 'TPR.G40814' => 'tpr', 'TPR.G772' => 'tpr', 'TWI12G0376' => 'twi', 'TWI32G0933' => 'twi', 'TWI36G0929' => 'twi', 'TWI53G2079' => 'twi', 'TWI74G0373' => 'twi', 'unitig_22.g5149' => 'ugi', 'unitig_578.g15809' => 'ugi', 'vmacro21018' => 'vma', 'VMungo0464G0603' => 'vmu', 'VMungo0464G1821' => 'vmu', 'VMungo0472G0001' => 'vmu', 'VMungo0472G0002' => 'vmu', 'VMungo0720G0582' => 'vmu', 'VMungo0720G2806' => 'vmu', 'VMungo1383G0412' => 'vmu', 'VMungo1383G1598' => 'vmu', 'Zm00001eb022900' => 'zma', 'Zm00001eb065640' => 'zma', 'Zm00001eb139560' => 'zma', 'Zm00001eb146910' => 'zma', 'Zm00001eb146920' => 'zma', 'Zm00001eb164040' => 'zma', 'Zm00001eb249980' => 'zma', 'Zm00001eb259940' => 'zma', 'Zm00001eb366760' => 'zma', 'Zm00001eb434140' => 'zma' ) $gf_id = 'HOM05D000980' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000980' ) $data_identifier = 'HOM05D000980' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 3, 'ach' => (int) 1, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 8, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 2, 'cqu' => (int) 3, 'bca' => (int) 14, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 8, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'ccan' => (int) 2, 'cde' => (int) 4, 'cfa' => (int) 10, 'ccl' => (int) 1, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 2, 'cpa' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 3, 'dca' => (int) 4, 'din' => (int) 2, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 9, 'fan' => (int) 35, 'fve' => (int) 13, 'gma' => (int) 16, 'ghi' => (int) 5, 'gra' => (int) 3, 'vvi' => (int) 1, 'han' => (int) 5, 'cav' => (int) 6, 'vpl' => (int) 9, 'lal' => (int) 6, 'lja' => (int) 11, 'lonja' => (int) 1, 'lsa' => (int) 1, 'mes' => (int) 2, 'mbi' => (int) 12, 'mdo' => (int) 15, 'mtr' => (int) 25, 'cme' => (int) 9, 'egut' => (int) 3, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 3, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 2, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 3, 'ppa' => (int) 1, 'ppe' => (int) 18, 'psa' => (int) 14, 'pso' => (int) 26, 'qlo' => (int) 11, 'rch' => (int) 17, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 3, 'sci' => (int) 2, 'sed' => (int) 10, 'sgi' => (int) 3, 'sas' => (int) 4, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 2, 'esa' => (int) 4, 'tpr' => (int) 18, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 1, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434140' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1